Antibodies Against Membrane Protein Targets banner

As pharma increasingly shifts its attention to biologics, more attention is being paid to developing biotherapeutics against membrane-bound targets - and the rapid adoption of ML and other advanced computational tools offers an exciting and expanded toolkit for R&D scientists working in this space. For 2024, the 3rd Annual PEGS Europe Antibodies Against Membrane Protein Targets conference explores various antigen strategies, emerging modalities and promising avenues for expanding the druggable space via computational tools, novel target identification methods, and advanced understandings of protein signaling. The latest advancements in antibody discovery will be covered, including in silico approaches, transgenic models, and synthetic libraries.

Recommended Short Course*
Monday, 4 November, 14:00 – 17:00
SC5: Best Practices for Targeting GPCRs, Ion Channels, and Transporters with Monoclonal Antibodies
*Separate registration required. See short courses page for details. All short courses take place in-person only.

Thursday, 7 November

07:30Registration and Morning Coffee

EMERGING MODALITIES FOR MEMBRANE PROTEIN TARGETS

08:25

Chairperson’s Remarks

Corey Smith, PhD, Principal Research Scientist, Global Biologics Protein Science, AbbVie

08:30

Targeted Degradation of Membrane Proteins Using SureTACs Technology

Madelon Maurice, PhD, Professor, Molecular Cell Biology, University of Utrecht; Scientific Founder and Scientific Lead, Laigo Bio

We have pioneered a novel technology using heterobifunctional antibodies (SureTACs: surface removal targeting chimeras) for the degradation of membrane proteins. SureTACs induce proximity of a transmembrane E3 ligase and a cell surface target protein, resulting in the ubiquitination and internalisation and lysosomal degradation of the target. Advantages of SureTAC technology compared to conventional antagonising antibodies include reduced off-target toxicity, improved tissue specificity, and the possibility to target currently undruggable proteins.

09:00

Selective Engagement of Insulin Receptor Isoforms with Synthetic Miniproteins

Benjamin J. Hackel, PhD, Professor, Chemical Engineering & Materials Science, University of Minnesota

Insulin receptor isoform A, uniquely expressed in tumours unlike the ubiquitously-expressed isoform B, is a compelling breast cancer target. Selective isoform engagement is challenged by homology and structural constraints resulting from epitope/membrane proximity. We leveraged our synthetic miniprotein platform—with efficient evolution of high-affinity, selective binding, robust developability, and a variety of topologies and paratope architectures to engage distinct epitopes—to engineer subnanomolar, isoform-selective binders.

09:30

Nanobodies Targeting GPCRs for Brain Diseases

Pierre-André Lafon, PhD, Postdoctoral Fellow, Institute of Functional Genomics, University of Montpellier

We have developed nanobodies targeting a class of glutamate receptors, the mGlu receptors, a family of GPCRs that control synaptic transmission. We show that nanobodies acting as allosteric modulators of the mGlu2 receptor can limit glutamate release at the synapse. A nanobody rescues the behavioral deficits in preclinical models of schizophrenia. It penetrates the brain after systemic injection and has a long-lasting effect in the brain after one dose.

10:00Coffee Break in the Exhibit Hall with Poster Viewing

ANTIGEN STRATEGIES

10:45

Comparative Evaluation of Antigen Format Performance with Different Antibody Platforms

Corey Smith, PhD, Principal Research Scientist, Global Biologics Protein Science, AbbVie

Generation of therapeutic antibodies to transmembrane protein targets in a properly folded and presented form can be very challenging. cDNA, soluble antigens (extracellular domains), as well as evolving platforms like Virus-Like Particles and nanodiscs all have advantages and disadvantages for antigen presentation. In this talk, I will explore various methods for the generation of complex transmembrane proteins with a focus on the application of different antigen platforms for antibody discovery.

11:15

Optimising SMALP Selection for Membrane Protein Research

Tim Dafforn, PhD, Professor, Biotechnology, University of Birmingham

Maintaining membrane protein targets in their native state is a crucial part of any drug discovery campaign. The relatively recent development of extraction systems that protect and preserve the membrane environment around membrane proteins has gone a long way to supporting the native state. In this talk I will show an extensive study of the SMA-based extraction system showing a novel high-throughput method that accelerates SMA selection. I hope the talk will leave you with:

  • An appreciation of the opportunities offered by SMA solubilisation
  • Insights into the method itself
  • An understanding of the influence of polymer type on extraction
11:45

KEYNOTE PRESENTATION: Computational Design of Membrane Protein Structures, Functions, and Therapeutics

Patrick Barth, PhD, Associate Professor, Protein and Cell Engineering, EPFL

Membrane receptors trigger a wide range of cellular functions upon sensing various extracellular stimuli and are associated with numerous diseases. We are developing computational approaches integrating protein design, molecular dynamics simulations and deep learning interpretation of protein motions to uncover the biophysical underpinnings of membrane protein functions. Using these techniques, we are reprogramming the functions of natural receptors and designing new classes of receptor-based biosensors and ligands for basic, synthetic cell biology and therapeutic applications.

12:15 LUNCHEON PRESENTATION:

A Fully Integrated Biologics Platform for the Discovery of Therapeutic Antibodies to Accelerate Early-Stage Translation

Preeti Bakrania, Principal Business Development Manager, Platforms, Partnerships, LifeArc

LifeArc has provided antibody humanisation capabilities to academia and early-stage biotech’s over 30 years and of the 94 mAbs we have humanised, 5 have been approved as medicines including the top selling mAbs globally (Keytruda® (pembrolizumab) and Entivyo® (vedolizumab). Now we launch, LifeArc’s fully human antibody discovery platform, offering partners access to our clinically validated transgenic mouse platform, innovative single B-cell based screening technologies and comprehensive developability assessment to produce fully human antibodies suitable for further preclinical development, providing new and innovative treatment options to patients.

12:45Luncheon in the Exhibit Hall with Last Chance for Poster Viewing

DISCOVERY STRATEGIES FOR TARGETING TRANSMEMBRANE PROTEINS

13:55

Chairperson’s Remarks

Jenny Mattsson, PhD, Principal Scientist, Preclinical Research, BioInvent International AB

14:00

Discovery and Engineering of Antibodies against Membrane Proteins

Noel T. Pauli, PhD, Group Leader, Antibody Engineering, Adimab LLC

Membrane proteins remain a major challenge for antibody-based drugs. We have developed an antibody discovery and optimisation platform that pairs immune diversities with a highly-engineered yeast to robustly target membrane proteins. We demonstrate the power of this platform through the identification and subsequent optimisation of an agonistic anti-CCR5 IgG. Additionally, we report on the isolation of novel T cell engaging anti-CD3 HCAbs and their subsequent validation in a bispecific format. 

14:30

Creating Ion-Channel Modulating Antibodies by Fusing Cysteine-Rich Miniproteins into Antibody CDR Loops

John D. McCafferty, PhD, CTO and Founder, Maxion Therapeutics

Venom derived cysteine-rich miniproteins (knottins) have potential as therapeutic agents to block ion channels but suffer from manufacturing difficulties, short half-lives and a lack of specificity.  Maxion have developed a novel molecular format wherein a peripheral CDR loop of an antibody has been replaced by a knottin. This format, termed a KnotBody, combines the benefits of both scaffolds with the antibody gaining the functionality of a scaffold pre-disposed to the blockade of ion channels and the knottin enjoying the extended half-life and the additional specificity conferred by the antibody molecule. This presentation illustrates the generation and optimisation of KnotBody inhibitors. 

15:00

Structure, Function, and Use of P2X7-Blocking and Non-Blocking Nanobodies

Anna M. Mann, PhD, Postdoctoral Fellow, University Medical Center Hamburg-Eppendorf (UKE)

Blocking the ATP-gated P2X7 ion channel ameliorates inflammatory diseases and cancer in animal models. We generated nanobodies that modify P2X7 gating. Cryo-EM analysis revealed the mechanism of action of these robust single immunoglobulin domains. A single injection of nanobody-encoding AAV vectors blocks P2X7 for weeks, ameliorating colon cancer. We further used these nanobodies as targeting ligands by insertion into the AAV capsid to target P2X7-expressing endothelial cells in kidney inflammation.

INTERACTIVE DISCUSSIONS

15:30Interactive Discussions

Interactive Discussions are informal, moderated discussions, allowing participants to exchange ideas and experiences and develop future collaborations around a focused topic. Each discussion will be led by a facilitator who keeps the discussion on track and the group engaged. To get the most out of this format, please come prepared to share examples from your work, be a part of a collective, problem-solving session, and participate in active idea sharing. 

TABLE 1:

Avoiding Roadblocks: Maneuvering the Challenges of Difficult Targets

Ross Chambers, PhD, Vice President, Antibody Discovery, Integral Molecular, Inc.

  • Antigen: antigen design and format strategies for maximizing expression, immunogencity, and focusing antibody responses 
  • Antibody: pros and cons of different approaches 
  • Discovery: pros and cons of different approaches to efficiently identify diverse antibody panels
  • Characterization: Strategies to efficiently select lead candidates​
16:10

Discovery Strategies for Antibodies Targeting Complex Multi-Spanning Membrane Proteins

Trevor Wilkinson, PhD, Director, Biologics Engineering, AstraZeneca

Integral membrane proteins with complex multi-spanning topologies provide significant opportunities for development of therapeutic antibodies. Examples of these proteins include GPCRs, ion channels, transporters, adhesion molecules, and tumour-associated antigens. Whilst discovery of antibodies to these targets is regarded as challenging, strategies are emerging enabling antigen generation to drive discovery efforts. This presentation provides case studies highlighting discovery of antibodies to GPCRs, ion channels, and a tumour-associated antigen.

16:40

Identifying Novel Membrane Protein-Specific Antibodies by Prediction-Based Discovery

Jenny Mattsson, PhD, Principal Scientist, Preclinical Research, BioInvent International AB

To enable the identification of novel antibodies targeting cell membrane proteins, we used a combination of whole-cell panning, next-generation sequencing, and bioinformatics. Antibody sequences encoding specificity for membrane proteins were identified using mathematical modeling-based prediction of antibody enrichment during panning. Using this approach, we identified a diverse pool of membrane protein-targeting antibodies for phenotypic, function-first discovery.

17:10Close of Antibodies Against Membrane Proteins Track